MGYG000310125

Taxonomy

Caccovicinus sp017889125 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Caccovicinus > Caccovicinus sp017889125

Cluster representative

MGYG000320193

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320193 on MGnify
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Annotations

MGYG000310125’s cluster representative genome MGYG000320193 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320193 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000310125 Copy API Endpoint

MGYG000310125’s cluster representative (MGYG000320193) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320193’s sequence. Because MGYG000310125 has been clustered with MGYG000320193 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000310125.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320193

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025266	SAMEA112905005	Probiotic
1.00	SAMEA7571835	SAMEA112905381	Prebiotic
1.00	SAMEA7697625	SAMEA112904897	Probiotic
1.00	SAMEA9449945	SAMEA112904907	Prebiotic
1.00	SAMEA7722474	SAMEA112904967	Prebiotic
1.00	SAMEA9449835	SAMEA112904998	Probiotic
1.00	SAMEA7571790	SAMEA112905026	Prebiotic
1.00	SAMEA10159251	SAMEA112905291	Control
1.00	SAMEA10105049	SAMEA112904916	Control
1.00	SAMEA9449912	SAMEA112904962	Probiotic