HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904916: a HoloFood chicken host

Data available for SAMEA112904916


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
View 4 derived samples
API endpoint
/api/animals/SAMEA112904916 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904916, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 21 g
Average Daily Feed intake: Day 00 - 35 77.21 g
Average Daily Feed intake: Day 07 - 21 70.4 g
Average Daily Feed intake: Day 21 - 35 115.38 g
Average Daily Gain: Day 00 - 07 20.89 g
Average Daily Gain: Day 00 - 35 53.02 g
Average Daily Gain: Day 07 - 21 52.16 g
Average Daily Gain: Day 21 - 35 69.93 g
Average European Performance Efficiency Factor: Day 00 - 07 202.7 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.35 None
Average Feed to Conversion Ratio: Day 07 - 21 1.35 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 48.47 g
Average body weight at day 07 194.72 g
Average body weight at day 21 925 g
Average body weight at day 35 1904 g
European Performance Efficiency Factor: Day 00 - 35 354.9 None
European Performance Efficiency Factor: Day 07 - 21 386.48 None
European Performance Efficiency Factor: Day 21 - 35 423.83 None
FCR (not corrected): Day 00 - 07 1.012 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.458 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.65 None
Feed to Conversion Ratio: Day 00 - 07 1.005 g/g
Feed to Conversion Ratio: Day 00 - 35 1.456 g/g
Feed to Conversion Ratio: Day 21 - 35 1.65 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=88.89 P1=11.11 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=42.86 P1=19.05 P2=33.33 P3=4.76 P4=0.00 %
Litter at Day 07 5.74 pH
Litter at Day 21 8.16 pH
Litter at Day 35 8.47 pH
Mean Abdominal fat Yield 1.59 %
Mean Abdominal fat weight 30.47 g
Mean Breast Yield 18.31 %
Mean Breast weight 354.57 g
Mean CRP at Day 07 1.8605 pg/mg
Mean CRP at Day 21 3.0466 pg/mg
Mean CRP at Day 35 1.0861 pg/mg
Mean Carcass Weight 1495.9 g
Mean Carcass Yield 77.4 %
Mean HPT at Day 07 1.1647 ng/ml
Mean HPT at Day 21 0.79085 ng/ml
Mean HPT at Day 35 1.0652 ng/ml
Mean LPS at Day 07 6.239 ng/L
Mean LPS at Day 21 4.4386 ng/L
Mean LPS at Day 35 6.5209 ng/L
Mean Legs Yield 20.49 %
Mean Legs weight 396.32 g
Mean TBARS 0.05 mg MDA/kg
Mean carcass body weight 1933.3 g
Mean feather cortisol at Day 07 6.1817 pg/mg
Mean feather cortisol at Day 21 6.2567 pg/mg
Mean feather cortisol at Day 35 6.45 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 2.5 %
Mortality: Day 00 - 35 2.5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CC20 None

Sample metadata

Marker Measurement Units
Animal code CC20.05 None
Breed Cobb None
C-Reactive protein 4.66 pg/ml
Chicken body weight 213.6 g
Feather cortisol 7.92 pg/mg
Haptoglobin 0 ng/ml
Lipopolysaccharide 36.34 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None