HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904962: a HoloFood chicken host

Data available for SAMEA112904962


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
View 4 derived samples
API endpoint
/api/animals/SAMEA112904962 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904962, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 22.12 g
Average Daily Feed intake: Day 00 - 35 96.74 g
Average Daily Feed intake: Day 07 - 21 84.12 g
Average Daily Feed intake: Day 21 - 35 149.2 g
Average Daily Gain: Day 00 - 07 22.97 g
Average Daily Gain: Day 00 - 35 66.61 g
Average Daily Gain: Day 07 - 21 58.3 g
Average Daily Gain: Day 21 - 35 96.74 g
Average European Performance Efficiency Factor: Day 00 - 07 238.58 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.443 None
Average Feed to Conversion Ratio: Day 07 - 21 1.443 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 44.62 g
Average body weight at day 07 205.42 g
Average body weight at day 21 1021.7 g
Average body weight at day 35 2376.1 g
European Performance Efficiency Factor: Day 00 - 35 458.71 None
European Performance Efficiency Factor: Day 07 - 21 404.11 None
European Performance Efficiency Factor: Day 21 - 35 627.31 None
FCR (not corrected): Day 00 - 07 0.963 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.452 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.542 None
Feed to Conversion Ratio: Day 00 - 07 0.963 g/g
Feed to Conversion Ratio: Day 00 - 35 1.452 g/g
Feed to Conversion Ratio: Day 21 - 35 1.542 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=66.67 P1=19.05 P2=9.52 P3=4.76 P4=0.00 %
Litter at Day 07 5.82 pH
Litter at Day 21 8.26 pH
Litter at Day 35 8.45 pH
Mean Abdominal fat Yield 1.46 %
Mean Abdominal fat weight 37.95 g
Mean Breast Yield 17.45 %
Mean Breast weight 456.57 g
Mean CRP at Day 07 2.3419 pg/mg
Mean CRP at Day 21 1.8476 pg/mg
Mean CRP at Day 35 1.1579 pg/mg
Mean Carcass Weight 1987.2 g
Mean Carcass Yield 75.94 %
Mean HPT at Day 07 0.70408 ng/ml
Mean HPT at Day 21 0.59161 ng/ml
Mean HPT at Day 35 0.73335 ng/ml
Mean LPS at Day 07 4.1474 ng/L
Mean LPS at Day 21 6.2027 ng/L
Mean LPS at Day 35 2.9732 ng/L
Mean Legs Yield 21.1 %
Mean Legs weight 553.25 g
Mean TBARS 0.0133 mg MDA/kg
Mean carcass body weight 2616.7 g
Mean feather cortisol at Day 07 7.4683 pg/mg
Mean feather cortisol at Day 21 10.257 pg/mg
Mean feather cortisol at Day 35 33.778 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CC01 None

Sample metadata

Marker Measurement Units
Animal code CC01.01 None
Breed Cobb None
C-Reactive protein 3.89 pg/ml
Chicken body weight 161.2 g
Feather cortisol 8.13 pg/mg
Haptoglobin 0 ng/ml
Lipopolysaccharide 17.91 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None