HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905291: a HoloFood chicken host

Data available for SAMEA112905291


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 3 derived samples
API endpoint
/api/animals/SAMEA112905291 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905291, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 23.36 g
Average Daily Feed intake: Day 00 - 35 86.98 g
Average Daily Feed intake: Day 07 - 21 71.98 g
Average Daily Feed intake: Day 21 - 35 135.94 g
Average Daily Gain: Day 00 - 07 18.42 g
Average Daily Gain: Day 00 - 35 56.92 g
Average Daily Gain: Day 07 - 21 50.68 g
Average Daily Gain: Day 21 - 35 82.41 g
Average European Performance Efficiency Factor: Day 00 - 07 145.2 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.429 None
Average Feed to Conversion Ratio: Day 07 - 21 1.42 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 44.84 g
Average body weight at day 07 173.75 g
Average body weight at day 21 883.33 g
Average body weight at day 35 2037 g
European Performance Efficiency Factor: Day 00 - 35 363.16 None
European Performance Efficiency Factor: Day 07 - 21 347.99 None
European Performance Efficiency Factor: Day 21 - 35 499.56 None
FCR (not corrected): Day 00 - 07 1.268 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.532 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.65 None
Feed to Conversion Ratio: Day 00 - 07 1.268 g/g
Feed to Conversion Ratio: Day 00 - 35 1.528 g/g
Feed to Conversion Ratio: Day 21 - 35 1.65 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=92.59 P1=3.70 P2=3.70 P3=0.00 P4=0.00 %
Litter at Day 07 5.7 pH
Litter at Day 21 7.73 pH
Litter at Day 35 8.2 pH
Mean Abdominal fat Yield 1.58 %
Mean Abdominal fat weight 37.67 g
Mean Breast Yield 20.1 %
Mean Breast weight 486.25 g
Mean CRP at Day 07 2.1585 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1823.8 g
Mean Carcass Yield 76.01 %
Mean HPT at Day 07 1.2031 ng/ml
Mean HPT at Day 21 0.7467 ng/ml
Mean HPT at Day 35 0.81156 ng/ml
Mean LPS at Day 07 7.0477 ng/L
Mean LPS at Day 21 4.3509 ng/L
Mean LPS at Day 35 5.8143 ng/L
Mean Legs Yield 19.38 %
Mean Legs weight 464.32 g
Mean TBARS 0.0533 mg MDA/kg
Mean carcass body weight 2397.5 g
Mean feather cortisol at Day 07 8.1217 pg/mg
Mean feather cortisol at Day 21 9.5017 pg/mg
Mean feather cortisol at Day 35 8.3633 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 2.5 %
Mortality: Day 07 - 21 2.5 %
Mortality: Day 21 - 35 0 %
Pen code CB06 None

Sample metadata

Marker Measurement Units
Animal code CB06.06 None
Breed Cobb None
C-Reactive protein 1.92 pg/ml
Chicken body weight 198.6 g
Feather cortisol 7.78 pg/mg
Haptoglobin 252.15 ng/ml
Lipopolysaccharide 48.99 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None