HoloFood Data Portal

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MGYG000308696

Details for MGYG000308696, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Coproplasma Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Coproplasma
Cluster representative

MGYG000315926

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315926 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308696’s cluster representative genome MGYG000315926 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315926 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308696 Copy API Endpoint
Samples containing this genome

MGYG000308696’s cluster representative (MGYG000315926) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315926’s sequence. Because MGYG000308696 has been clustered with MGYG000315926 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308696.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315926

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7571781 Control
1.00 SAMEA7025262 Control
1.00 SAMEA10104916 Prebiotic
1.00 SAMEA10145564 Control
1.00 SAMEA7025242 Control
1.00 SAMEA7571775 Control
1.00 SAMEA7571794 Prebiotic
1.00 SAMEA10104977 Control
1.00 SAMEA7697583 Probiotic
0.99 SAMEA14099421 Control