HoloFood Data Portal

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MGYG000308665

Details for MGYG000308665, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-269 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-508 > CAG-269
Cluster representative

MGYG000311519

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311519 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308665’s cluster representative genome MGYG000311519 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311519 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308665 Copy API Endpoint
Samples containing this genome

MGYG000308665’s cluster representative (MGYG000311519) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311519’s sequence. Because MGYG000308665 has been clustered with MGYG000311519 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308665.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311519

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025267 Control
0.99 SAMEA9449854 Prebiotic
0.98 SAMEA7025268 Control
0.97 SAMEA7697576 Prebiotic
0.97 SAMEA10159251 Control
0.97 SAMEA10104979 Probiotic
0.96 SAMEA7025260 Prebiotic
0.95 SAMEA7025252 Prebiotic
0.95 SAMEA7025263 Control
0.94 SAMEA10104932 Control