HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308650

Details for MGYG000308650, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Pullilachnospira stercoravium Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Pullilachnospira > Pullilachnospira stercoravium
Cluster representative

MGYG000311831

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000311831 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308650’s cluster representative genome MGYG000311831 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000311831 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308650 Copy API Endpoint
Samples containing this genome

MGYG000308650’s cluster representative (MGYG000311831) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000311831’s sequence. Because MGYG000308650 has been clustered with MGYG000311831 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308650.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000311831

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025259 Prebiotic
0.99 SAMEA7025252 Prebiotic
0.98 SAMEA7697588 Probiotic
0.98 SAMEA7025276 Control
0.97 SAMEA7025237 Probiotic
0.93 SAMEA7025289 Control
0.92 SAMEA10158026 Control
0.92 SAMEA7025258 Probiotic
0.91 SAMEA7025277 Control
0.91 SAMEA7025260 Prebiotic