HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904879: a HoloFood chicken host

Data available for SAMEA112904879


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 6 derived samples
API endpoint
/api/animals/SAMEA112904879 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904879, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 19.94 g
Average Daily Feed intake: Day 00 - 35 95.61 g
Average Daily Feed intake: Day 07 - 21 79.21 g
Average Daily Feed intake: Day 21 - 35 154.04 g
Average Daily Gain: Day 00 - 07 18.52 g
Average Daily Gain: Day 00 - 35 61.26 g
Average Daily Gain: Day 07 - 21 57.58 g
Average Daily Gain: Day 21 - 35 86.29 g
Average European Performance Efficiency Factor: Day 00 - 07 172.07 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.375 None
Average Feed to Conversion Ratio: Day 07 - 21 1.375 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 43.72 g
Average body weight at day 07 173.38 g
Average body weight at day 21 979.56 g
Average body weight at day 35 2187.6 g
European Performance Efficiency Factor: Day 00 - 35 392.46 None
European Performance Efficiency Factor: Day 07 - 21 418.65 None
European Performance Efficiency Factor: Day 21 - 35 483.39 None
FCR (not corrected): Day 00 - 07 1.076 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.561 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.785 None
Feed to Conversion Ratio: Day 00 - 07 1.076 g/g
Feed to Conversion Ratio: Day 00 - 35 1.561 g/g
Feed to Conversion Ratio: Day 21 - 35 1.785 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=21.21 P1=36.36 P2=33.33 P3=6.06 P4=3.03 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=33.33 P1=37.04 P2=29.63 P3=0.00 P4=0.00 %
Litter at Day 07 5.67 pH
Litter at Day 21 7.38 pH
Litter at Day 35 6.5 pH
Mean Abdominal fat Yield 1.77 %
Mean Abdominal fat weight 49.97 g
Mean Breast Yield 19.75 %
Mean Breast weight 560.28 g
Mean CRP at Day 07 1.5058 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 2157.2 g
Mean Carcass Yield 76.47 %
Mean HPT at Day 07 0.99283 ng/ml
Mean HPT at Day 21 0.74412 ng/ml
Mean HPT at Day 35 0.81179 ng/ml
Mean LPS at Day 07 2.9732 ng/L
Mean LPS at Day 21 3.1281 ng/L
Mean LPS at Day 35 3.0751 ng/L
Mean Legs Yield 19.74 %
Mean Legs weight 555.15 g
Mean TBARS 0.0433 mg MDA/kg
Mean carcass body weight 2820.7 g
Mean feather cortisol at Day 07 10.038 pg/mg
Mean feather cortisol at Day 21 9.53 pg/mg
Mean feather cortisol at Day 35 16.72 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CA06 None

Sample metadata

Marker Measurement Units
Animal code CA06.05 None
Breed Cobb None
C-Reactive protein 0.06 pg/ml
Chicken body weight 219.8 g
Feather cortisol 7.93 pg/mg
Haptoglobin 171.54 ng/ml
Lipopolysaccharide 8.22 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None