HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308503

Details for MGYG000308503, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Pelethenecus faecipullorum Bacteria > Firmicutes > Bacilli > Acholeplasmatales > Anaeroplasmataceae > Pelethenecus > Pelethenecus faecipullorum
Cluster representative

MGYG000315040

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315040 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308503’s cluster representative genome MGYG000315040 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315040 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308503 Copy API Endpoint
Samples containing this genome

MGYG000308503’s cluster representative (MGYG000315040) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315040’s sequence. Because MGYG000308503 has been clustered with MGYG000315040 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308503.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315040

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Containment Sample accession Animal accession Treatment
0.99 SAMEA10104983 Control
0.99 SAMEA10104952 Prebiotic
0.99 SAMEA14095991 Control
0.99 SAMEA7025261 Probiotic
0.99 SAMEA7697600 Prebiotic
0.99 SAMEA10159248 Prebiotic
0.99 SAMEA10105032 Control
0.99 SAMEA10104979 Probiotic
0.99 SAMEA7025253 Prebiotic
0.99 SAMEA10105000 Control