HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905350: a HoloFood chicken host

Data available for SAMEA112905350


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 4 derived samples
API endpoint
/api/animals/SAMEA112905350 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905350, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 20.39 g
Average Daily Feed intake: Day 00 - 35 89.4 g
Average Daily Feed intake: Day 07 - 21 74.43 g
Average Daily Feed intake: Day 21 - 35 142.05 g
Average Daily Gain: Day 00 - 07 18.6 g
Average Daily Gain: Day 00 - 35 58.23 g
Average Daily Gain: Day 07 - 21 52.93 g
Average Daily Gain: Day 21 - 35 83.33 g
Average European Performance Efficiency Factor: Day 00 - 07 165.45 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.406 None
Average Feed to Conversion Ratio: Day 07 - 21 1.406 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 45.42 g
Average body weight at day 07 175.64 g
Average body weight at day 21 916.67 g
Average body weight at day 35 2083.3 g
European Performance Efficiency Factor: Day 00 - 35 369.73 None
European Performance Efficiency Factor: Day 07 - 21 376.4 None
European Performance Efficiency Factor: Day 21 - 35 488.87 None
FCR (not corrected): Day 00 - 07 1.115 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.538 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.705 None
Feed to Conversion Ratio: Day 00 - 07 1.096 g/g
Feed to Conversion Ratio: Day 00 - 35 1.535 g/g
Feed to Conversion Ratio: Day 21 - 35 1.705 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=88.89 P1=7.41 P2=3.70 P3=0.00 P4=0.00 %
Litter at Day 07 5.69 pH
Litter at Day 21 6.54 pH
Litter at Day 35 7.76 pH
Mean Abdominal fat Yield 1.52 %
Mean Abdominal fat weight 35.22 g
Mean Breast Yield 21.31 %
Mean Breast weight 490.15 g
Mean CRP at Day 07 2.1993 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1795.2 g
Mean Carcass Yield 78.16 %
Mean HPT at Day 07 1.0704 ng/ml
Mean HPT at Day 21 0.8006 ng/ml
Mean HPT at Day 35 0.82469 ng/ml
Mean LPS at Day 07 6.8402 ng/L
Mean LPS at Day 21 5.8723 ng/L
Mean LPS at Day 35 5.6998 ng/L
Mean Legs Yield 20.26 %
Mean Legs weight 465.33 g
Mean TBARS 0.0667 mg MDA/kg
Mean carcass body weight 2297.5 g
Mean feather cortisol at Day 07 17.972 pg/mg
Mean feather cortisol at Day 21 14.378 pg/mg
Mean feather cortisol at Day 35 8.0883 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 2.5 %
Mortality: Day 00 - 35 2.5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CB01 None

Sample metadata

Marker Measurement Units
Animal code CB01.05 None
Breed Cobb None
C-Reactive protein 2.68 pg/ml
Chicken body weight 230.3 g
Feather cortisol 5.64 pg/mg
Haptoglobin 284.43 ng/ml
Lipopolysaccharide 43.23 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None