HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308466

Details for MGYG000308466, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Limivivens merdigallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Limivivens > Limivivens merdigallinarum
Cluster representative

MGYG000309939

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309939 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308466’s cluster representative genome MGYG000309939 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309939 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308466 Copy API Endpoint
Samples containing this genome

MGYG000308466’s cluster representative (MGYG000309939) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309939’s sequence. Because MGYG000308466 has been clustered with MGYG000309939 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308466.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309939

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025252 Prebiotic
0.95 SAMEA7025278 Prebiotic
0.88 SAMEA9449922 Control
0.83 SAMEA7025277 Control
0.82 SAMEA7697588 Probiotic
0.81 SAMEA7025279 Probiotic
0.77 SAMEA7025248 Probiotic
0.76 SAMEA10159248 Prebiotic
0.73 SAMEA7571845 Control
0.72 SAMEA7025263 Control