HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904735: a HoloFood chicken host

Data available for SAMEA112904735


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has inflammatory markers data Has inflammatory markers data
Has histological data Has histological data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 11 derived samples
API endpoint
/api/animals/SAMEA112904735 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904735, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 22.35 g
Average Daily Feed intake: Day 00 - 35 83.63 g
Average Daily Feed intake: Day 07 - 21 74.13 g
Average Daily Feed intake: Day 21 - 35 127.88 g
Average Daily Gain: Day 00 - 07 22.92 g
Average Daily Gain: Day 00 - 35 57.84 g
Average Daily Gain: Day 07 - 21 55.57 g
Average Daily Gain: Day 21 - 35 77.57 g
Average European Performance Efficiency Factor: Day 00 - 07 223.32 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.334 None
Average Feed to Conversion Ratio: Day 07 - 21 1.334 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 44.26 g
Average body weight at day 07 204.71 g
Average body weight at day 21 982.76 g
Average body weight at day 35 2068.8 g
European Performance Efficiency Factor: Day 00 - 35 380.05 None
European Performance Efficiency Factor: Day 07 - 21 416.62 None
European Performance Efficiency Factor: Day 21 - 35 470.54 None
FCR (not corrected): Day 00 - 07 0.997 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.449 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.649 None
Feed to Conversion Ratio: Day 00 - 07 0.975 g/g
Feed to Conversion Ratio: Day 00 - 35 1.446 g/g
Feed to Conversion Ratio: Day 21 - 35 1.649 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=57.89 P1=21.05 P2=15.79 P3=5.26 P4=0.00 %
Litter at Day 07 6.02 pH
Litter at Day 21 7.43 pH
Litter at Day 35 8.28 pH
Mean Abdominal fat Yield 1.54 %
Mean Abdominal fat weight 33.05 g
Mean Breast Yield 18.15 %
Mean Breast weight 390.25 g
Mean CRP at Day 07 2.2668 pg/mg
Mean CRP at Day 21 2.2354 pg/mg
Mean CRP at Day 35 1.274 pg/mg
Mean Carcass Weight 1627.6 g
Mean Carcass Yield 75.96 %
Mean HPT at Day 07 0.81704 ng/ml
Mean HPT at Day 21 0.76518 ng/ml
Mean HPT at Day 35 0.8706 ng/ml
Mean LPS at Day 07 4.9759 ng/L
Mean LPS at Day 21 3.0961 ng/L
Mean LPS at Day 35 3.9468 ng/L
Mean Legs Yield 20.16 %
Mean Legs weight 430.23 g
Mean TBARS 0.05 mg MDA/kg
Mean carcass body weight 2141.7 g
Mean feather cortisol at Day 07 8.0083 pg/mg
Mean feather cortisol at Day 21 11.667 pg/mg
Mean feather cortisol at Day 35 15.892 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 5 %
Mortality: Day 00 - 35 5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CC11 None

Sample metadata

Marker Measurement Units
Animal code CC11.18 None
Breed Cobb None
C-Reactive protein 1.22 pg/ml
Chicken body weight 2080 g
Feather cortisol 16.54 pg/mg
Haptoglobin 0 ng/ml
Lipopolysaccharide 34.43 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 35 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None