MGYG000308465

Taxonomy

Copromonas faecavium Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Copromonas > Copromonas faecavium

Cluster representative

MGYG000318525

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318525 on MGnify
 Show other genomes in cluster

Annotations

MGYG000308465’s cluster representative genome MGYG000318525 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318525 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308465 Copy API Endpoint

MGYG000308465’s cluster representative (MGYG000318525) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318525’s sequence. Because MGYG000308465 has been clustered with MGYG000318525 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308465.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318525

 Download all as TSV

Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA14099424	SAMEA112905085	Prebiotic
1.00	SAMEA7025248	SAMEA112905319	Probiotic
1.00	SAMEA7697631	SAMEA112905241	Prebiotic
1.00	SAMEA10104979	SAMEA112905042	Probiotic
1.00	SAMEA10104930	SAMEA112905365	Control
0.99	SAMEA7025260	SAMEA112905317	Prebiotic
0.99	SAMEA10159248	SAMEA112904733	Prebiotic
0.99	SAMEA9449872	SAMEA112904787	Prebiotic
0.99	SAMEA9449839	SAMEA112905373	Control
0.98	SAMEA7025252	SAMEA112905079	Prebiotic