HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320871

Details for MGYG000320871, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Merdibacter merdigallinarum Bacteria > Firmicutes > Bacilli > Erysipelotrichales > Erysipelotrichaceae > Merdibacter > Merdibacter merdigallinarum
Cluster representative

MGYG000312611

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312611 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320871’s cluster representative genome MGYG000312611 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312611 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320871 Copy API Endpoint
Samples containing this genome

MGYG000320871’s cluster representative (MGYG000312611) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312611’s sequence. Because MGYG000320871 has been clustered with MGYG000312611 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320871.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312611

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Containment Sample accession Animal accession Treatment
1.00 SAMEA10158026 Control
0.91 SAMEA7025252 Prebiotic
0.89 SAMEA7571795 Prebiotic
0.89 SAMEA7025276 Control
0.88 SAMEA7025277 Control
0.88 SAMEA7025260 Prebiotic
0.88 SAMEA7025245 Probiotic
0.87 SAMEA7722473 Prebiotic
0.86 SAMEA9449907 Prebiotic
0.86 SAMEA7571767 Control