MGYG000320871

Taxonomy

Merdibacter merdigallinarum Bacteria > Firmicutes > Bacilli > Erysipelotrichales > Erysipelotrichaceae > Merdibacter > Merdibacter merdigallinarum

Cluster representative

MGYG000312611

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312611 on MGnify
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Annotations

MGYG000320871’s cluster representative genome MGYG000312611 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312611 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320871 Copy API Endpoint

MGYG000320871’s cluster representative (MGYG000312611) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312611’s sequence. Because MGYG000320871 has been clustered with MGYG000312611 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320871.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312611

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Containment	Sample accession	Animal accession	Treatment
0.21	SAMEA9449836	SAMEA112904902	Probiotic
0.21	SAMEA7697592	SAMEA112904737	Control
0.21	SAMEA7571785	SAMEA112904982	Probiotic
0.21	SAMEA9449914	SAMEA112904779	Probiotic
0.21	SAMEA10104988	SAMEA112905033	Control
0.20	SAMEA7571800	SAMEA112904785	Probiotic
0.20	SAMEA7571848	SAMEA112905284	Prebiotic
0.20	SAMEA9449904	SAMEA112904951	Control
0.20	SAMEA10104911	SAMEA112904777	Probiotic