HoloFood Data Portal

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MGYG000320868

Details for MGYG000320868, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovicinus merdipullorum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Caccovicinus > Caccovicinus merdipullorum
Cluster representative

MGYG000309494

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309494 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320868’s cluster representative genome MGYG000309494 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309494 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320868 Copy API Endpoint
Samples containing this genome

MGYG000320868’s cluster representative (MGYG000309494) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309494’s sequence. Because MGYG000320868 has been clustered with MGYG000309494 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320868.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309494

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Containment Sample accession Animal accession Treatment
0.86 SAMEA7025271 Probiotic
0.86 SAMEA10454444 Probiotic
0.86 SAMEA7025244 Probiotic
0.86 SAMEA7571851 Prebiotic
0.86 SAMEA7025243 Prebiotic
0.85 SAMEA10105011 Prebiotic
0.85 SAMEA10104914 Control
0.85 SAMEA9449942 Control
0.85 SAMEA7697601 Prebiotic
0.85 SAMEA7571870 Prebiotic