HoloFood Data Portal

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MGYG000320601

Details for MGYG000320601, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Pseudoruminococcus_B merdavium Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Pseudoruminococcus_B > Pseudoruminococcus_B merdavium
Cluster representative

MGYG000307966

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000307966 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320601’s cluster representative genome MGYG000307966 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000307966 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320601 Copy API Endpoint
Samples containing this genome

MGYG000320601’s cluster representative (MGYG000307966) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000307966’s sequence. Because MGYG000320601 has been clustered with MGYG000307966 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320601.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000307966

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Containment Sample accession Animal accession Treatment
0.91 SAMEA7025238 Probiotic
0.91 SAMEA9449922 Control
0.90 SAMEA7025263 Control
0.90 SAMEA7025237 Probiotic
0.90 SAMEA9449921 Control
0.90 SAMEA10105043 Control
0.89 SAMEA10104927 Prebiotic
0.88 SAMEA7697631 Prebiotic
0.88 SAMEA7025252 Prebiotic
0.88 SAMEA9449965 Probiotic