HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904882: a HoloFood chicken host

Data available for SAMEA112904882


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
View 4 derived samples
API endpoint
/api/animals/SAMEA112904882 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904882, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 20.5 g
Average Daily Feed intake: Day 00 - 35 70.78 g
Average Daily Feed intake: Day 07 - 21 61.57 g
Average Daily Feed intake: Day 21 - 35 107.46 g
Average Daily Gain: Day 00 - 07 20.34 g
Average Daily Gain: Day 00 - 35 49.83 g
Average Daily Gain: Day 07 - 21 45.98 g
Average Daily Gain: Day 21 - 35 68.43 g
Average European Performance Efficiency Factor: Day 00 - 07 196.81 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.339 None
Average Feed to Conversion Ratio: Day 07 - 21 1.339 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 43.86 g
Average body weight at day 07 186.25 g
Average body weight at day 21 830 g
Average body weight at day 35 1788 g
European Performance Efficiency Factor: Day 00 - 35 342.05 None
European Performance Efficiency Factor: Day 07 - 21 343.39 None
European Performance Efficiency Factor: Day 21 - 35 435.75 None
FCR (not corrected): Day 00 - 07 1.012 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.421 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.57 None
Feed to Conversion Ratio: Day 00 - 07 1.008 g/g
Feed to Conversion Ratio: Day 00 - 35 1.42 g/g
Feed to Conversion Ratio: Day 21 - 35 1.57 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=96.30 P1=3.70 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Litter at Day 07 5.78 pH
Litter at Day 21 7.88 pH
Litter at Day 35 8.54 pH
Mean Abdominal fat Yield 1.32 %
Mean Abdominal fat weight 25.3 g
Mean Breast Yield 15.83 %
Mean Breast weight 305.13 g
Mean CRP at Day 07 2.3501 pg/mg
Mean CRP at Day 21 2.8473 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1483.5 g
Mean Carcass Yield 77.04 %
Mean HPT at Day 07 0.67785 ng/ml
Mean HPT at Day 21 0.59161 ng/ml
Mean HPT at Day 35 0.59161 ng/ml
Mean LPS at Day 07 6.3536 ng/L
Mean LPS at Day 21 4.7859 ng/L
Mean LPS at Day 35 6.2256 ng/L
Mean Legs Yield 22.72 %
Mean Legs weight 437.43 g
Mean TBARS 0.0667 mg MDA/kg
Mean carcass body weight 1925 g
Mean feather cortisol at Day 07 9.398 pg/mg
Mean feather cortisol at Day 21 6.3683 pg/mg
Mean feather cortisol at Day 35 3.6117 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 2.5 %
Mortality: Day 00 - 35 2.5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CC19 None

Sample metadata

Marker Measurement Units
Animal code CC19.02 None
Breed Ross None
C-Reactive protein 4.38 pg/ml
Chicken body weight 177.9 g
Feather cortisol 10.01 pg/mg
Haptoglobin 0 ng/ml
Lipopolysaccharide 42.23 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None