HoloFood Data Portal

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MGYG000320016

Details for MGYG000320016, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Copromonas sp900541255 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Copromonas > Copromonas sp900541255
Cluster representative

MGYG000314258

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314258 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320016’s cluster representative genome MGYG000314258 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314258 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320016 Copy API Endpoint
Samples containing this genome

MGYG000320016’s cluster representative (MGYG000314258) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314258’s sequence. Because MGYG000320016 has been clustered with MGYG000314258 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320016.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314258

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Containment Sample accession Animal accession Treatment
1.00 SAMEA9449957 Probiotic
1.00 SAMEA10159272 Probiotic
1.00 SAMEA9449956 Probiotic
1.00 SAMEA9449960 Control
1.00 SAMEA14099421 Control
1.00 SAMEA14409936 Control
1.00 SAMEA10145601 Control
1.00 SAMEA7697599 Control
1.00 SAMEA10104922 Prebiotic
1.00 SAMEA7722474 Prebiotic