HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905027: a HoloFood chicken host

Data available for SAMEA112905027


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
View 4 derived samples
API endpoint
/api/animals/SAMEA112905027 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905027, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 19.8 g
Average Daily Feed intake: Day 00 - 35 67.17 g
Average Daily Feed intake: Day 07 - 21 66.12 g
Average Daily Feed intake: Day 21 - 35 93.88 g
Average Daily Gain: Day 00 - 07 20.01 g
Average Daily Gain: Day 00 - 35 43.51 g
Average Daily Gain: Day 07 - 21 41.91 g
Average Daily Gain: Day 21 - 35 56.86 g
Average European Performance Efficiency Factor: Day 00 - 07 202.29 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.578 None
Average Feed to Conversion Ratio: Day 07 - 21 1.578 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 42.48 g
Average body weight at day 07 182.57 g
Average body weight at day 21 769.35 g
Average body weight at day 35 1565.4 g
European Performance Efficiency Factor: Day 00 - 35 281.88 None
European Performance Efficiency Factor: Day 07 - 21 265.68 None
European Performance Efficiency Factor: Day 21 - 35 344.37 None
FCR (not corrected): Day 00 - 07 0.989 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.544 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.651 None
Feed to Conversion Ratio: Day 00 - 07 0.989 g/g
Feed to Conversion Ratio: Day 00 - 35 1.544 g/g
Feed to Conversion Ratio: Day 21 - 35 1.651 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Litter at Day 07 5.95 pH
Litter at Day 21 7.32 pH
Litter at Day 35 8.53 pH
Mean Abdominal fat Yield 1.17 %
Mean Abdominal fat weight 21.4 g
Mean Breast Yield 17.69 %
Mean Breast weight 316.98 g
Mean CRP at Day 07 1.7849 pg/mg
Mean CRP at Day 21 3.1641 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1326.2 g
Mean Carcass Yield 75.52 %
Mean HPT at Day 07 0.67174 ng/ml
Mean HPT at Day 21 0.59161 ng/ml
Mean HPT at Day 35 0.59161 ng/ml
Mean LPS at Day 07 6.3223 ng/L
Mean LPS at Day 21 3.3381 ng/L
Mean LPS at Day 35 5.9898 ng/L
Mean Legs Yield 21.3 %
Mean Legs weight 375.56 g
Mean TBARS 0.0533 mg MDA/kg
Mean carcass body weight 1760 g
Mean feather cortisol at Day 07 7.1433 pg/mg
Mean feather cortisol at Day 21 11.227 pg/mg
Mean feather cortisol at Day 35 9.8 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CC16 None

Sample metadata

Marker Measurement Units
Animal code CC16.03 None
Breed Ross None
C-Reactive protein 2.42 pg/ml
Chicken body weight 146.4 g
Feather cortisol 7.04 pg/mg
Haptoglobin 114.92 ng/ml
Lipopolysaccharide 35.85 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 7 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None