HoloFood Data Portal

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MGYG000318524

Details for MGYG000318524, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Helicobacter_D pullorum Bacteria > Campylobacterota > Campylobacteria > Campylobacterales > Helicobacteraceae > Helicobacter_D > Helicobacter_D pullorum
Cluster representative

MGYG000315584

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315584 on MGnify
 Show other genomes in cluster
Annotations

MGYG000318524’s cluster representative genome MGYG000315584 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315584 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000318524 Copy API Endpoint
Samples containing this genome

MGYG000318524’s cluster representative (MGYG000315584) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315584’s sequence. Because MGYG000318524 has been clustered with MGYG000315584 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000318524.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315584

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Containment Sample accession Animal accession Treatment
0.49 SAMEA7571808 Control
0.49 SAMEA7571773 Prebiotic
0.49 SAMEA10130113 Control
0.48 SAMEA7697589 Control
0.47 SAMEA7571794 Prebiotic
0.47 SAMEA7697590 Control
0.47 SAMEA9449922 Control
0.46 SAMEA7697583 Probiotic
0.45 SAMEA7025274 Probiotic
0.42 SAMEA7025249 Prebiotic