HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000316481

Details for MGYG000316481, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Avoscillospira_A avistercoris Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Avoscillospira_A > Avoscillospira_A avistercoris
Cluster representative

MGYG000314916

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314916 on MGnify
 Show other genomes in cluster
Annotations

MGYG000316481’s cluster representative genome MGYG000314916 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314916 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000316481 Copy API Endpoint
Samples containing this genome

MGYG000316481’s cluster representative (MGYG000314916) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314916’s sequence. Because MGYG000316481 has been clustered with MGYG000314916 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000316481.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314916

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Containment Sample accession Animal accession Treatment
0.87 SAMEA7697607 Control
0.87 SAMEA7571806 Control
0.86 SAMEA7025250 Control
0.86 SAMEA7722473 Prebiotic
0.86 SAMEA10105071 Prebiotic
0.85 SAMEA9449918 Probiotic
0.84 SAMEA7025235 Probiotic
0.84 SAMEA7722478 Control
0.84 SAMEA7571794 Prebiotic
0.84 SAMEA7571781 Control