HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905214: a HoloFood chicken host

Data available for SAMEA112905214


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has host genomic data Has host genomic data
View 2 derived samples
API endpoint
/api/animals/SAMEA112905214 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905214, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 19.16 g
Average Daily Feed intake: Day 00 - 35 99 g
Average Daily Feed intake: Day 07 - 21 72.33 g
Average Daily Feed intake: Day 21 - 35 169.44 g
Average Daily Gain: Day 00 - 07 17.73 g
Average Daily Gain: Day 00 - 35 66.67 g
Average Daily Gain: Day 07 - 21 55.94 g
Average Daily Gain: Day 21 - 35 101.88 g
Average European Performance Efficiency Factor: Day 00 - 07 164.1 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.293 None
Average Feed to Conversion Ratio: Day 07 - 21 1.293 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 42.94 g
Average body weight at day 07 167.05 g
Average body weight at day 21 950.18 g
Average body weight at day 35 2376.4 g
European Performance Efficiency Factor: Day 00 - 35 449 None
European Performance Efficiency Factor: Day 07 - 21 432.59 None
European Performance Efficiency Factor: Day 21 - 35 612.52 None
FCR (not corrected): Day 00 - 07 1.08 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.485 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.663 None
Feed to Conversion Ratio: Day 00 - 07 1.08 g/g
Feed to Conversion Ratio: Day 00 - 35 1.485 g/g
Feed to Conversion Ratio: Day 21 - 35 1.663 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=41.18 P1=23.53 P2=26.47 P3=5.88 P4=2.94 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=46.15 P1=38.46 P2=15.38 P3=0.00 P4=0.00 %
Litter at Day 07 6.24 pH
Litter at Day 21 7.55 pH
Litter at Day 35 7.43 pH
Mean Abdominal fat Yield 1.75 %
Mean Abdominal fat weight 49.93 g
Mean Breast Yield 20.29 %
Mean Breast weight 582.5 g
Mean CRP at Day 07 1.0984 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.1356 pg/mg
Mean Carcass Weight 2236.1 g
Mean Carcass Yield 77.92 %
Mean HPT at Day 07 0.80698 ng/ml
Mean HPT at Day 21 0.71261 ng/ml
Mean HPT at Day 35 0.63926 ng/ml
Mean LPS at Day 07 3.5013 ng/L
Mean LPS at Day 21 3.9897 ng/L
Mean LPS at Day 35 6.8603 ng/L
Mean Legs Yield 20.12 %
Mean Legs weight 577.6 g
Mean TBARS 0.0367 mg MDA/kg
Mean carcass body weight 2869.3 g
Mean feather cortisol at Day 07 13.314 pg/mg
Mean feather cortisol at Day 21 19.052 pg/mg
Mean feather cortisol at Day 35 26 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 0 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CA22 None

Sample metadata

Marker Measurement Units
Animal code CA22.12 None
Breed Cobb None
C-Reactive protein 0.59 pg/ml
Chicken body weight 866.8 g
Feather cortisol 16.47 pg/mg
Haptoglobin 76.18 ng/ml
Lipopolysaccharide 14.75 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 21 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None