HoloFood Data Portal

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MGYG000313857

Details for MGYG000313857, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Blautia_A avistercoris Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Blautia_A > Blautia_A avistercoris
Cluster representative

MGYG000318222

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318222 on MGnify
 Show other genomes in cluster
Annotations

MGYG000313857’s cluster representative genome MGYG000318222 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318222 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313857 Copy API Endpoint
Samples containing this genome

MGYG000313857’s cluster representative (MGYG000318222) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318222’s sequence. Because MGYG000313857 has been clustered with MGYG000318222 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313857.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318222

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Containment Sample accession Animal accession Treatment
0.93 SAMEA7571853 Prebiotic
0.93 SAMEA10105031 Control
0.93 SAMEA9449938 Prebiotic
0.92 SAMEA7571848 Prebiotic
0.92 SAMEA10454447 Prebiotic
0.92 SAMEA14095990 Prebiotic
0.92 SAMEA10105042 Probiotic
0.91 SAMEA7697602 Probiotic
0.91 SAMEA9449916 Probiotic
0.91 SAMEA7571810 Prebiotic