HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905339: a HoloFood chicken host

Data available for SAMEA112905339


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 5 derived samples
API endpoint
/api/animals/SAMEA112905339 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905339, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 21.1 g
Average Daily Feed intake: Day 00 - 35 71.11 g
Average Daily Feed intake: Day 07 - 21 63.07 g
Average Daily Feed intake: Day 21 - 35 107.18 g
Average Daily Gain: Day 00 - 07 21.88 g
Average Daily Gain: Day 00 - 35 48.23 g
Average Daily Gain: Day 07 - 21 44.61 g
Average Daily Gain: Day 21 - 35 65.02 g
Average European Performance Efficiency Factor: Day 00 - 07 226.97 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.428 None
Average Feed to Conversion Ratio: Day 07 - 21 1.414 g/g
Average Mortality without culleds: Day 07 - 21 2.7 %
Average body weight at day 00 43.99 g
Average body weight at day 07 197.16 g
Average body weight at day 21 821.67 g
Average body weight at day 35 1732 g
European Performance Efficiency Factor: Day 00 - 35 318.93 None
European Performance Efficiency Factor: Day 07 - 21 306.98 None
European Performance Efficiency Factor: Day 21 - 35 394.49 None
FCR (not corrected): Day 00 - 07 0.964 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.48 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.648 None
Feed to Conversion Ratio: Day 00 - 07 0.964 g/g
Feed to Conversion Ratio: Day 00 - 35 1.474 g/g
Feed to Conversion Ratio: Day 21 - 35 1.648 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=76.19 P1=9.52 P2=9.52 P3=4.76 P4=0.00 %
Litter at Day 07 6.02 pH
Litter at Day 21 7.63 pH
Litter at Day 35 8.43 pH
Mean Abdominal fat Yield 0.99 %
Mean Abdominal fat weight 18.12 g
Mean Breast Yield 15.65 %
Mean Breast weight 279.18 g
Mean CRP at Day 07 1.6379 pg/mg
Mean CRP at Day 21 3.2215 pg/mg
Mean CRP at Day 35 1.0972 pg/mg
Mean Carcass Weight 1326.1 g
Mean Carcass Yield 74.5 %
Mean HPT at Day 07 0.85124 ng/ml
Mean HPT at Day 21 0.59161 ng/ml
Mean HPT at Day 35 0.76788 ng/ml
Mean LPS at Day 07 6.4719 ng/L
Mean LPS at Day 21 4.3806 ng/L
Mean LPS at Day 35 6.3 ng/L
Mean Legs Yield 21.68 %
Mean Legs weight 386.82 g
Mean TBARS 0.05 mg MDA/kg
Mean carcass body weight 1783.3 g
Mean feather cortisol at Day 07 12.48 pg/mg
Mean feather cortisol at Day 21 9.2383 pg/mg
Mean feather cortisol at Day 35 9.82 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 2.5 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 2.5 %
Mortality: Day 07 - 21 2.7 %
Mortality: Day 21 - 35 0 %
Pen code CC18 None

Sample metadata

Marker Measurement Units
Animal code CC18.11 None
Breed Ross None
C-Reactive protein 15.44 pg/ml
Chicken body weight 1118 g
Feather cortisol 9.79 pg/mg
Haptoglobin 13.75 ng/ml
Lipopolysaccharide 24.27 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 21 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None