HoloFood Data Portal

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MGYG000313616

Details for MGYG000313616, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Eisenbergiella merdigallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Eisenbergiella > Eisenbergiella merdigallinarum
Cluster representative

MGYG000313574

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313574 on MGnify
 Show other genomes in cluster
Annotations

MGYG000313616’s cluster representative genome MGYG000313574 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313574 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313616 Copy API Endpoint
Samples containing this genome

MGYG000313616’s cluster representative (MGYG000313574) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313574’s sequence. Because MGYG000313616 has been clustered with MGYG000313574 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313616.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313574

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Containment Sample accession Animal accession Treatment
0.71 SAMEA10159251 Control
0.71 SAMEA7697597 Probiotic
0.70 SAMEA7722474 Prebiotic
0.70 SAMEA10145564 Control
0.69 SAMEA14095991 Control
0.69 SAMEA10104911 Probiotic
0.68 SAMEA14409936 Control
0.66 SAMEA10454442 Probiotic
0.65 SAMEA7571791 Control
0.64 SAMEA7571841 Probiotic