HoloFood Data Portal

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MGYG000312127

Details for MGYG000312127, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Flavonifractor avicola Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Flavonifractor > Flavonifractor avicola
Cluster representative

MGYG000316219

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316219 on MGnify
 Show other genomes in cluster
Annotations

MGYG000312127’s cluster representative genome MGYG000316219 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316219 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312127 Copy API Endpoint
Samples containing this genome

MGYG000312127’s cluster representative (MGYG000316219) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316219’s sequence. Because MGYG000312127 has been clustered with MGYG000316219 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312127.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316219

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Containment Sample accession Animal accession Treatment
0.96 SAMEA7571858 Probiotic
0.95 SAMEA10104933 Control
0.95 SAMEA7571848 Prebiotic
0.95 SAMEA10104911 Probiotic
0.94 SAMEA10104938 Prebiotic
0.94 SAMEA9449881 Control
0.94 SAMEA7571807 Probiotic
0.93 SAMEA10104978 Control
0.93 SAMEA14095991 Control
0.92 SAMEA7025262 Control