HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000311455

Details for MGYG000311455, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Mediterraneibacter caccogallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter caccogallinarum
Cluster representative

MGYG000309508

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309508 on MGnify
 Show other genomes in cluster
Annotations

MGYG000311455’s cluster representative genome MGYG000309508 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309508 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000311455 Copy API Endpoint
Samples containing this genome

MGYG000311455’s cluster representative (MGYG000309508) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309508’s sequence. Because MGYG000311455 has been clustered with MGYG000309508 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000311455.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309508

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Containment Sample accession Animal accession Treatment
0.96 SAMEA10145599 Control
0.96 SAMEA7697613 Prebiotic
0.92 SAMEA7025263 Control
0.92 SAMEA10454448 Prebiotic
0.91 SAMEA7571774 Control
0.91 SAMEA9449947 Prebiotic
0.91 SAMEA9449858 Probiotic
0.90 SAMEA7025254 Prebiotic
0.90 SAMEA7025245 Probiotic
0.89 SAMEA10455499 Prebiotic