HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112905287: a HoloFood chicken host

Data available for SAMEA112905287


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has host genomic data Has host genomic data
View 8 derived samples
API endpoint
/api/animals/SAMEA112905287 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112905287, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 20.5 g
Average Daily Feed intake: Day 00 - 35 70.78 g
Average Daily Feed intake: Day 07 - 21 61.57 g
Average Daily Feed intake: Day 21 - 35 107.46 g
Average Daily Gain: Day 00 - 07 20.34 g
Average Daily Gain: Day 00 - 35 49.83 g
Average Daily Gain: Day 07 - 21 45.98 g
Average Daily Gain: Day 21 - 35 68.43 g
Average European Performance Efficiency Factor: Day 00 - 07 196.81 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.339 None
Average Feed to Conversion Ratio: Day 07 - 21 1.339 g/g
Average Mortality without culleds: Day 07 - 21 0 %
Average body weight at day 00 43.86 g
Average body weight at day 07 186.25 g
Average body weight at day 21 830 g
Average body weight at day 35 1788 g
European Performance Efficiency Factor: Day 00 - 35 342.05 None
European Performance Efficiency Factor: Day 07 - 21 343.39 None
European Performance Efficiency Factor: Day 21 - 35 435.75 None
FCR (not corrected): Day 00 - 07 1.012 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.421 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.57 None
Feed to Conversion Ratio: Day 00 - 07 1.008 g/g
Feed to Conversion Ratio: Day 00 - 35 1.42 g/g
Feed to Conversion Ratio: Day 21 - 35 1.57 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=96.30 P1=3.70 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Litter at Day 07 5.78 pH
Litter at Day 21 7.88 pH
Litter at Day 35 8.54 pH
Mean Abdominal fat Yield 1.32 %
Mean Abdominal fat weight 25.3 g
Mean Breast Yield 15.83 %
Mean Breast weight 305.13 g
Mean CRP at Day 07 2.3501 pg/mg
Mean CRP at Day 21 2.8473 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1483.5 g
Mean Carcass Yield 77.04 %
Mean HPT at Day 07 0.67785 ng/ml
Mean HPT at Day 21 0.59161 ng/ml
Mean HPT at Day 35 0.59161 ng/ml
Mean LPS at Day 07 6.3536 ng/L
Mean LPS at Day 21 4.7859 ng/L
Mean LPS at Day 35 6.2256 ng/L
Mean Legs Yield 22.72 %
Mean Legs weight 437.43 g
Mean TBARS 0.0667 mg MDA/kg
Mean carcass body weight 1925 g
Mean feather cortisol at Day 07 9.398 pg/mg
Mean feather cortisol at Day 21 6.3683 pg/mg
Mean feather cortisol at Day 35 3.6117 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 0 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 2.5 %
Mortality: Day 00 - 35 2.5 %
Mortality: Day 07 - 21 0 %
Mortality: Day 21 - 35 0 %
Pen code CC19 None

Sample metadata

Marker Measurement Units
Animal code CC19.13 None
Breed Ross None
C-Reactive protein 0.82 pg/ml
Chicken body weight 1982 g
Feather cortisol 5.07 pg/mg
Haptoglobin 0 ng/ml
Lipopolysaccharide 39.63 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 35 None
Sex Male None

Treatment metadata

Marker Measurement Units
Treatment code CC None
Treatment name Control None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None