HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309426

Details for MGYG000309426, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Borkfalkia avistercoris Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Borkfalkia > Borkfalkia avistercoris
Cluster representative

MGYG000313016

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313016 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309426’s cluster representative genome MGYG000313016 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313016 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309426 Copy API Endpoint
Samples containing this genome

MGYG000309426’s cluster representative (MGYG000313016) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313016’s sequence. Because MGYG000309426 has been clustered with MGYG000313016 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309426.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313016

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Containment Sample accession Animal accession Treatment
0.67 SAMEA7697602 Probiotic
0.67 SAMEA7571807 Probiotic
0.67 SAMEA10105017 Probiotic
0.66 SAMEA7025238 Probiotic
0.66 SAMEA10104983 Control
0.66 SAMEA14099424 Prebiotic
0.66 SAMEA7025254 Prebiotic
0.65 SAMEA7697581 Probiotic
0.65 SAMEA10104953 Prebiotic
0.64 SAMEA7025242 Control