MGYG000309420

Taxonomy

Limosilactobacillus reuteri_E Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Limosilactobacillus > Limosilactobacillus reuteri_E

Cluster representative

MGYG000312694

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312694 on MGnify
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Annotations

MGYG000309420’s cluster representative genome MGYG000312694 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312694 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309420 Copy API Endpoint

MGYG000309420’s cluster representative (MGYG000312694) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312694’s sequence. Because MGYG000309420 has been clustered with MGYG000312694 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309420.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312694

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10130028	SAMEA112905363	Prebiotic
1.00	SAMEA7697594	SAMEA112904978	Probiotic
1.00	SAMEA7025263	SAMEA112905147	Control
1.00	SAMEA7817176	SAMEA112905328	Control
1.00	SAMEA7025255	SAMEA112904988	Prebiotic
1.00	SAMEA10130030	SAMEA112904978	Probiotic
1.00	SAMEA10158026	SAMEA112905254	Control
1.00	SAMEA10130031	SAMEA112904803	Probiotic
0.99	SAMEA7571809	SAMEA112905197	Control
0.99	SAMEA10130037	SAMEA112905174	Control