HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

SAMEA112904803: a HoloFood chicken host

Data available for SAMEA112904803


Animal details
System
chicken
Samples
G Has metagenomic data
Has metagenomic data
Has metabolomic data Has metabolomic data
Has inflammatory markers data Has inflammatory markers data
Has histological data Has histological data
Has host genomic data Has host genomic data
Has transcriptome data Has transcriptome data
View 12 derived samples
API endpoint
/api/animals/SAMEA112904803 Copy API Endpoint
Animal metadata

Metadata for sample SAMEA112904803, stored in BioSamples.

 Download all as TSV

Pen metadata

Marker Measurement Units
Average Daily Feed intake: Day 00 - 07 21.39 g
Average Daily Feed intake: Day 00 - 35 81.35 g
Average Daily Feed intake: Day 07 - 21 67.91 g
Average Daily Feed intake: Day 21 - 35 127.84 g
Average Daily Gain: Day 00 - 07 19.71 g
Average Daily Gain: Day 00 - 35 54.73 g
Average Daily Gain: Day 07 - 21 49.86 g
Average Daily Gain: Day 21 - 35 77.1 g
Average European Performance Efficiency Factor: Day 00 - 07 181.58 None
Average Feed to Conversion Ratio (not corrected): Day 07 - 21 1.375 None
Average Feed to Conversion Ratio: Day 07 - 21 1.362 g/g
Average Mortality without culleds: Day 07 - 21 2.5 %
Average body weight at day 00 38.29 g
Average body weight at day 07 176.25 g
Average body weight at day 21 874.24 g
Average body weight at day 35 1953.7 g
European Performance Efficiency Factor: Day 00 - 35 358.95 None
European Performance Efficiency Factor: Day 07 - 21 356.9 None
European Performance Efficiency Factor: Day 21 - 35 465.04 None
FCR (not corrected): Day 00 - 07 1.085 None
Feed to Conversion Ratio (not corrected): Day 00 - 35 1.492 None
Feed to Conversion Ratio (not corrected): Day 21 - 35 1.658 None
Feed to Conversion Ratio: Day 00 - 07 1.085 g/g
Feed to Conversion Ratio: Day 00 - 35 1.486 g/g
Feed to Conversion Ratio: Day 21 - 35 1.658 g/g
Foot Pad Dermatitis (FPD Punctuation) at Day 07 P0=100.00 P1=0.00 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 21 P0=90.91 P1=9.09 P2=0.00 P3=0.00 P4=0.00 %
Foot Pad Dermatitis (FPD Punctuation) at Day 35 P0=92.59 P1=7.41 P2=0.00 P3=0.00 P4=0.00 %
Litter at Day 07 5.86 pH
Litter at Day 21 8.18 pH
Litter at Day 35 8.38 pH
Mean Abdominal fat Yield 1.66 %
Mean Abdominal fat weight 35.92 g
Mean Breast Yield 19.82 %
Mean Breast weight 432.52 g
Mean CRP at Day 07 2.0374 pg/mg
Mean CRP at Day 21 1.0536 pg/mg
Mean CRP at Day 35 1.0536 pg/mg
Mean Carcass Weight 1656.1 g
Mean Carcass Yield 76.21 %
Mean HPT at Day 07 1.5137 ng/ml
Mean HPT at Day 21 0.87021 ng/ml
Mean HPT at Day 35 0.61884 ng/ml
Mean LPS at Day 07 7.1807 ng/L
Mean LPS at Day 21 4.5251 ng/L
Mean LPS at Day 35 5.7829 ng/L
Mean Legs Yield 19.66 %
Mean Legs weight 425.13 g
Mean TBARS 0.12 mg MDA/kg
Mean carcass body weight 2171.7 g
Mean feather cortisol at Day 07 10.493 pg/mg
Mean feather cortisol at Day 21 15.123 pg/mg
Mean feather cortisol at Day 35 37.64 pg/mg
Mortality without culleds: Day 00 - 07 0 %
Mortality without culleds: Day 00 - 35 2.5 %
Mortality without culleds: Day 21 - 35 0 %
Mortality: Day 00 - 07 0 %
Mortality: Day 00 - 35 2.5 %
Mortality: Day 07 - 21 2.5 %
Mortality: Day 21 - 35 0 %
Pen code CB15 None

Sample metadata

Marker Measurement Units
Animal code CB15.07 None
Breed Ross None
C-Reactive protein 0 pg/ml
Chicken body weight 890.9 g
Feather cortisol 5.08 pg/mg
Haptoglobin 22.7 ng/ml
Lipopolysaccharide 31.65 ng/l
Organism Chicken None
Project HoloFood None
Sampling time Day 21 None
Sex Female None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CB None
Trial description Trial 2 None
Trial end 2019-05-19 None
Trial start 2019-04-21 None