HoloFood Data Portal

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MGYG000308935

Details for MGYG000308935, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccovivens Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccovivens
Cluster representative

MGYG000308935

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308935 on MGnify
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Annotations

MGYG000308935’s cluster representative genome MGYG000308935 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308935 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308935 Copy API Endpoint
Samples containing this genome

MGYG000308935’s cluster representative (MGYG000308935) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308935’s sequence. Because MGYG000308935 has been clustered with MGYG000308935 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308935.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308935

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025262 Control
0.89 SAMEA10105024 Control
0.78 SAMEA7697584 Control
0.77 SAMEA7722473 Prebiotic
0.76 SAMEA9449883 Control
0.75 SAMEA7571801 Probiotic
0.74 SAMEA7571781 Control
0.74 SAMEA7025250 Control
0.71 SAMEA9449849 Probiotic
0.71 SAMEA9449850 Control