HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308410

Details for MGYG000308410, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Borkfalkia stercoripullorum Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Borkfalkia > Borkfalkia stercoripullorum
Cluster representative

MGYG000317548

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317548 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308410’s cluster representative genome MGYG000317548 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317548 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308410 Copy API Endpoint
Samples containing this genome

MGYG000308410’s cluster representative (MGYG000317548) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317548’s sequence. Because MGYG000308410 has been clustered with MGYG000317548 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308410.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317548

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Containment Sample accession Animal accession Treatment
0.99 SAMEA7025282 Control
0.99 SAMEA10145575 Control
0.99 SAMEA10104922 Prebiotic
0.98 SAMEA7697623 Probiotic
0.98 SAMEA7025271 Probiotic
0.98 SAMEA10105068 Prebiotic
0.98 SAMEA14095991 Control
0.98 SAMEA7697594 Probiotic
0.98 SAMEA10454444 Probiotic
0.98 SAMEA9449951 Prebiotic