HoloFood Data Portal

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MGYG000308409

Details for MGYG000308409, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Eisenbergiella intestinigallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Eisenbergiella > Eisenbergiella intestinigallinarum
Cluster representative

MGYG000318713

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318713 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308409’s cluster representative genome MGYG000318713 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318713 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308409 Copy API Endpoint
Samples containing this genome

MGYG000308409’s cluster representative (MGYG000318713) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318713’s sequence. Because MGYG000308409 has been clustered with MGYG000318713 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308409.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318713

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Containment Sample accession Animal accession Treatment
1.00 SAMEA9449922 Control
1.00 SAMEA7025263 Control
1.00 SAMEA10105031 Control
1.00 SAMEA10104970 Probiotic
1.00 SAMEA9449873 Prebiotic
1.00 SAMEA7025244 Probiotic
1.00 SAMEA7697578 Control
1.00 SAMEA10159266 Control
1.00 SAMEA7571809 Control
1.00 SAMEA10454447 Prebiotic