HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308406

Details for MGYG000308406, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Fimimorpha excrementavium Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Fimimorpha > Fimimorpha excrementavium
Cluster representative

MGYG000307699

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000307699 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308406’s cluster representative genome MGYG000307699 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000307699 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308406 Copy API Endpoint
Samples containing this genome

MGYG000308406’s cluster representative (MGYG000307699) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000307699’s sequence. Because MGYG000308406 has been clustered with MGYG000307699 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308406.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000307699

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Containment Sample accession Animal accession Treatment
0.87 SAMEA7025237 Probiotic
0.83 SAMEA7697588 Probiotic
0.81 SAMEA9449922 Control
0.80 SAMEA7571847 Prebiotic
0.80 SAMEA7025260 Prebiotic
0.80 SAMEA7025259 Prebiotic
0.75 SAMEA7025263 Control
0.73 SAMEA7025236 Probiotic
0.67 SAMEA7025266 Probiotic
0.67 SAMEA9449907 Prebiotic