HoloFood Data Portal

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MGYG000308404

Details for MGYG000308404, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
UBA1417 sp900552925 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Acutalibacteraceae > UBA1417 > UBA1417 sp900552925
Cluster representative

MGYG000310845

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310845 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308404’s cluster representative genome MGYG000310845 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310845 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308404 Copy API Endpoint
Samples containing this genome

MGYG000308404’s cluster representative (MGYG000310845) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310845’s sequence. Because MGYG000308404 has been clustered with MGYG000310845 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308404.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310845

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Containment Sample accession Animal accession Treatment
0.92 SAMEA7025263 Control
0.92 SAMEA9449873 Prebiotic
0.92 SAMEA7697589 Control
0.91 SAMEA7571766 Control
0.91 SAMEA7025243 Prebiotic
0.91 SAMEA7571779 Prebiotic
0.91 SAMEA7571826 Probiotic
0.91 SAMEA10104983 Control
0.91 SAMEA10158026 Control
0.90 SAMEA7571791 Control