HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308402

Details for MGYG000308402, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Limivivens intestinipullorum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Limivivens > Limivivens intestinipullorum
Cluster representative

MGYG000309775

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309775 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308402’s cluster representative genome MGYG000309775 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309775 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308402 Copy API Endpoint
Samples containing this genome

MGYG000308402’s cluster representative (MGYG000309775) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309775’s sequence. Because MGYG000308402 has been clustered with MGYG000309775 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308402.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309775

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Containment Sample accession Animal accession Treatment
0.68 SAMEA10104972 Probiotic
0.68 SAMEA7697600 Prebiotic
0.66 SAMEA14095991 Control
0.66 SAMEA7025260 Prebiotic
0.65 SAMEA9449863 Prebiotic
0.65 SAMEA7025261 Probiotic
0.64 SAMEA9449884 Control
0.63 SAMEA10105031 Control
0.62 SAMEA7025248 Probiotic
0.60 SAMEA7571845 Control