MGYG000308402

Taxonomy

Limivivens intestinipullorum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Limivivens > Limivivens intestinipullorum

Cluster representative

MGYG000309775

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309775 on MGnify
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Annotations

MGYG000308402’s cluster representative genome MGYG000309775 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309775 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308402 Copy API Endpoint

MGYG000308402’s cluster representative (MGYG000309775) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309775’s sequence. Because MGYG000308402 has been clustered with MGYG000309775 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308402.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309775

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Containment	Sample accession	Animal accession	Treatment
0.21	SAMEA9449830	SAMEA112904739	Control
0.21	SAMEA10105046	SAMEA112904997	Control
0.21	SAMEA9449881	SAMEA112904904	Control
0.21	SAMEA10145595	SAMEA112904895	Control
0.20	SAMEA7571848	SAMEA112905284	Prebiotic
0.20	SAMEA7571810	SAMEA112905369	Prebiotic
0.20	SAMEA7722479	SAMEA112905115	Prebiotic