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Details for MGYG000308387, a genome assembled from HoloFood chicken metagenomes

Genome details
Ligilactobacillus aviarius Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Ligilactobacillus > Ligilactobacillus aviarius
Cluster representative


Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318110 on MGnify
 Show other genomes in cluster

MGYG000308387’s cluster representative genome MGYG000318110 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318110 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308387 Copy API Endpoint
Samples containing this genome

MGYG000308387’s cluster representative (MGYG000318110) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318110’s sequence. Because MGYG000308387 has been clustered with MGYG000318110 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308387.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318110

 Download all as TSV
Containment Sample accession Animal accession Treatment
1.00 SAMEA7025262 Control
0.97 SAMEA9449907 Prebiotic
0.92 SAMEA10145584 Control
0.92 SAMEA7571820 Probiotic
0.91 SAMEA10130031 Probiotic
0.89 SAMEA7368184 Prebiotic
0.89 SAMEA10130012 Prebiotic
0.86 SAMEA10130125 Prebiotic
0.84 SAMEA7025270 Probiotic
0.84 SAMEA10130124 Prebiotic