HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320866

Details for MGYG000320866, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Onthousia Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Onthousia
Cluster representative

MGYG000318577

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318577 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320866’s cluster representative genome MGYG000318577 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318577 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320866 Copy API Endpoint
Samples containing this genome

MGYG000320866’s cluster representative (MGYG000318577) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318577’s sequence. Because MGYG000320866 has been clustered with MGYG000318577 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320866.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318577

 Download all as TSV
Containment Sample accession Animal accession Treatment
1.00 SAMEA7697576 Prebiotic
0.98 SAMEA7025249 Prebiotic
0.97 SAMEA10455483 Prebiotic
0.91 SAMEA7697608 Control
0.88 SAMEA14099424 Prebiotic
0.87 SAMEA9449916 Probiotic
0.87 SAMEA10104961 Probiotic
0.86 SAMEA7571819 Probiotic
0.86 SAMEA14409936 Control
0.82 SAMEA7697612 Control