HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320840

Details for MGYG000320840, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Lactobacillus gallinarum Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Lactobacillus > Lactobacillus gallinarum
Cluster representative

MGYG000314949

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314949 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320840’s cluster representative genome MGYG000314949 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314949 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320840 Copy API Endpoint
Samples containing this genome

MGYG000320840’s cluster representative (MGYG000314949) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314949’s sequence. Because MGYG000320840 has been clustered with MGYG000314949 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320840.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314949

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Containment Sample accession Animal accession Treatment
0.91 SAMEA7025289 Control
0.91 SAMEA10145601 Control
0.91 SAMEA7368181 Probiotic
0.91 SAMEA10130112 Probiotic
0.91 SAMEA10145592 Control
0.91 SAMEA14099423 Control
0.91 SAMEA7025274 Probiotic
0.91 SAMEA7025275 Probiotic
0.91 SAMEA10158040 Probiotic
0.91 SAMEA10145584 Control