HoloFood Data Portal

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MGYG000320769

Details for MGYG000320769, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Borkfalkia faecipullorum Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Borkfalkia > Borkfalkia faecipullorum
Cluster representative

MGYG000313369

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313369 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320769’s cluster representative genome MGYG000313369 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313369 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320769 Copy API Endpoint
Samples containing this genome

MGYG000320769’s cluster representative (MGYG000313369) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313369’s sequence. Because MGYG000320769 has been clustered with MGYG000313369 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320769.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313369

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Containment Sample accession Animal accession Treatment
0.98 SAMEA7571794 Prebiotic
0.98 SAMEA7025260 Prebiotic
0.98 SAMEA10454445 Probiotic
0.98 SAMEA9449892 Probiotic
0.98 SAMEA7025236 Probiotic
0.98 SAMEA7571813 Prebiotic
0.98 SAMEA10145562 Control
0.97 SAMEA9449905 Prebiotic
0.97 SAMEA10455496 Control
0.97 SAMEA7571795 Prebiotic