HoloFood Data Portal

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MGYG000320527

Details for MGYG000320527, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Caccopulliclostridium gallistercoris Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA1242 > Caccopulliclostridium > Caccopulliclostridium gallistercoris
Cluster representative

MGYG000317109

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317109 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320527’s cluster representative genome MGYG000317109 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317109 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320527 Copy API Endpoint
Samples containing this genome

MGYG000320527’s cluster representative (MGYG000317109) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317109’s sequence. Because MGYG000320527 has been clustered with MGYG000317109 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320527.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317109

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Containment Sample accession Animal accession Treatment
0.68 SAMEA7571845 Control
0.68 SAMEA10145599 Control
0.68 SAMEA10104974 Probiotic
0.68 SAMEA14099421 Control
0.67 SAMEA9449947 Prebiotic
0.67 SAMEA7025247 Probiotic
0.67 SAMEA7697581 Probiotic
0.67 SAMEA10145570 Control
0.67 SAMEA10104977 Control
0.66 SAMEA9449850 Control