MGYG000320007

Taxonomy

Copromonas sp900541255 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Copromonas > Copromonas sp900541255

Cluster representative

MGYG000314258

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314258 on MGnify
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Annotations

MGYG000320007’s cluster representative genome MGYG000314258 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314258 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320007 Copy API Endpoint

MGYG000320007’s cluster representative (MGYG000314258) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314258’s sequence. Because MGYG000320007 has been clustered with MGYG000314258 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320007.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314258

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025262	SAMEA112905328	Control
1.00	SAMEA9449921	SAMEA112904834	Control
1.00	SAMEA7571841	SAMEA112904773	Probiotic
1.00	SAMEA7697595	SAMEA112905025	Prebiotic
1.00	SAMEA7025274	SAMEA112905263	Probiotic
1.00	SAMEA7571827	SAMEA112905382	Probiotic
1.00	SAMEA10105037	SAMEA112904745	Probiotic
1.00	SAMEA7697592	SAMEA112904737	Control
1.00	SAMEA10105011	SAMEA112904889	Prebiotic
1.00	SAMEA10105032	SAMEA112904833	Control