MGYG000317841

Taxonomy

Mediterraneibacter merdavium Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter merdavium

Cluster representative

MGYG000313770

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313770 on MGnify
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Annotations

MGYG000317841’s cluster representative genome MGYG000313770 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313770 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000317841 Copy API Endpoint

MGYG000317841’s cluster representative (MGYG000313770) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313770’s sequence. Because MGYG000317841 has been clustered with MGYG000313770 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000317841.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313770

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7571780	SAMEA112905210	Control
1.00	SAMEA10104961	SAMEA112904891	Probiotic
0.99	SAMEA7025260	SAMEA112905317	Prebiotic
0.99	SAMEA14095991	SAMEA112904755	Control
0.99	SAMEA10104915	SAMEA112904820	Control
0.99	SAMEA7025287	SAMEA112905268	Prebiotic
0.99	SAMEA10105012	SAMEA112905346	Control
0.99	SAMEA9449952	SAMEA112905334	Probiotic
0.99	SAMEA7025246	SAMEA112905368	Probiotic
0.99	SAMEA7697595	SAMEA112905025	Prebiotic