MGYG000317077

Taxonomy

Caccovicinus sp017889125 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Caccovicinus > Caccovicinus sp017889125

Cluster representative

MGYG000320193

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320193 on MGnify
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Annotations

MGYG000317077’s cluster representative genome MGYG000320193 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320193 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000317077 Copy API Endpoint

MGYG000317077’s cluster representative (MGYG000320193) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320193’s sequence. Because MGYG000317077 has been clustered with MGYG000320193 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000317077.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320193

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10105057	SAMEA112905285	Control
1.00	SAMEA10105015	SAMEA112904826	Probiotic
1.00	SAMEA10105036	SAMEA112905300	Probiotic
1.00	SAMEA9449883	SAMEA112904892	Control
1.00	SAMEA14095992	SAMEA112904848	Probiotic
1.00	SAMEA10104953	SAMEA112904751	Prebiotic
1.00	SAMEA7025249	SAMEA112904823	Prebiotic
1.00	SAMEA7025288	SAMEA112905217	Control
1.00	SAMEA7025253	SAMEA112905350	Prebiotic
1.00	SAMEA7697631	SAMEA112905241	Prebiotic