HoloFood Data Portal

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MGYG000315919

Details for MGYG000315919, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Intestinimonas pullistercoris Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Oscillospiraceae > Intestinimonas > Intestinimonas pullistercoris
Cluster representative

MGYG000310892

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310892 on MGnify
 Show other genomes in cluster
Annotations

MGYG000315919’s cluster representative genome MGYG000310892 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310892 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000315919 Copy API Endpoint
Samples containing this genome

MGYG000315919’s cluster representative (MGYG000310892) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310892’s sequence. Because MGYG000315919 has been clustered with MGYG000310892 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000315919.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310892

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Containment Sample accession Animal accession Treatment
0.99 SAMEA7697589 Control
0.99 SAMEA10105037 Probiotic
0.99 SAMEA7697594 Probiotic
0.99 SAMEA7571841 Probiotic
0.99 SAMEA14409936 Control
0.99 SAMEA7025259 Prebiotic
0.99 SAMEA7571833 Prebiotic
0.99 SAMEA7025277 Control
0.99 SAMEA7025267 Control
0.99 SAMEA10158036 Probiotic