MGYG000313235

Taxonomy

Alistipes excrementavium Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae > Alistipes > Alistipes excrementavium

Cluster representative

MGYG000310170

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310170 on MGnify
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Annotations

MGYG000313235’s cluster representative genome MGYG000310170 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310170 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000313235 Copy API Endpoint

MGYG000313235’s cluster representative (MGYG000310170) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310170’s sequence. Because MGYG000313235 has been clustered with MGYG000310170 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000313235.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310170

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10104933	SAMEA112904856	Control
1.00	SAMEA10104941	SAMEA112904809	Probiotic
1.00	SAMEA10105015	SAMEA112904826	Probiotic
1.00	SAMEA10455483	SAMEA112905075	Prebiotic
1.00	SAMEA9449860	SAMEA112904977	Control
1.00	SAMEA7722473	SAMEA112905065	Prebiotic
1.00	SAMEA9449873	SAMEA112904851	Prebiotic
1.00	SAMEA7722476	SAMEA112904871	Control
1.00	SAMEA10145560	SAMEA112904810	Control
1.00	SAMEA10454444	SAMEA112905185	Probiotic