MGYG000312217

Taxonomy

Mediterraneibacter pullicola Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter pullicola

Cluster representative

MGYG000318750

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318750 on MGnify
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Annotations

MGYG000312217’s cluster representative genome MGYG000318750 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318750 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000312217 Copy API Endpoint

MGYG000312217’s cluster representative (MGYG000318750) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318750’s sequence. Because MGYG000312217 has been clustered with MGYG000318750 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000312217.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318750

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Containment	Sample accession	Animal accession	Treatment
0.96	SAMEA7722479	SAMEA112905115	Prebiotic
0.96	SAMEA7571820	SAMEA112905089	Probiotic
0.96	SAMEA7571827	SAMEA112905382	Probiotic
0.96	SAMEA7722476	SAMEA112904871	Control
0.95	SAMEA9449835	SAMEA112904998	Probiotic
0.95	SAMEA9449915	SAMEA112905199	Probiotic
0.95	SAMEA7025260	SAMEA112905317	Prebiotic
0.95	SAMEA10105061	SAMEA112904863	Control
0.95	SAMEA7571821	SAMEA112905340	Probiotic
0.95	SAMEA10105060	SAMEA112905170	Control